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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036219 through 18771 annotations produced 1 hits



(CG14127):

Annotation Number : CG14127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036219
Gbrowse : chr3L:11874483-11876646 (+) // 100.0 //
Probeset : 1628725_at
Accessions : protein= NP_648520;, nucleotide= NM_140263;
FlyMine data for FBgn0036219.
VDRC has 2 RNAi stocks for FBgn0036219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head5 ± 10 of 4 2.50None
Eye1 ± 00 of 4 0.80None
Thoracicoabdominal ganglion1 ± 00 of 4 0.80None
Salivary gland4 ± 10 of 4 1.82None
Crop3 ± 10 of 4 1.40None
Midgut3 ± 10 of 4 1.70None
Tubule2 ± 00 of 4 1.20None
Hindgut2 ± 00 of 4 1.00None
Heart3 ± 20 of 4 1.64None
Fat body5 ± 20 of 4 2.23None
Ovary2 ± 00 of 4 1.10None
Testis3 ± 00 of 4 1.60None
Male accessory glands6 ± 20 of 4 2.60None
Virgin spermatheca3 ± 20 of 4 1.35None
Mated spermatheca1 ± 00 of 4 0.57None
Adult carcass6 ± 30 of 4 3.00None
Larval CNS0 ± 00 of 4 0.37None
Larval Salivary gland3 ± 10 of 4 1.36None
Larval midgut4 ± 10 of 4 1.97None
Larval tubule1 ± 00 of 4 0.70None
Larval hindgut2 ± 10 of 4 1.24None
Larval fat body5 ± 20 of 4 2.30None
Larval trachea4 ± 21 of 4 1.99None
Larval carcass2 ± 00 of 4 0.93None
S2 cells (growing)4 ± 10 of 4 1.90None
Whole fly2 ± 00 of 4

Looking for FBgn0036219. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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