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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036220 through 18771 annotations produced 1 hits



(CG5897):

Annotation Number : CG5897
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036220
Gbrowse : chr3L:11880984-11883772 (-) // 100.0 //
Probeset : 1630789_at
Accessions : protein= NP_001163427; /// NP_648521;, nucleotide= NM_001169956; /// NM_140264;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016490 // structural constituent of peritrophic me
FlyMine data for FBgn0036220.
VDRC has 2 RNAi stocks for FBgn0036220 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 3.10Up
Head1 ± 00 of 4 0.50None
Eye0 ± 00 of 4 0.41None
Thoracicoabdominal ganglion2 ± 10 of 4 1.10None
Salivary gland4 ± 20 of 4 2.19None
Crop1 ± 00 of 4 0.70None
Midgut29 ± 44 of 414.10Up
Tubule1 ± 00 of 4 0.60None
Hindgut1 ± 00 of 4 0.90None
Heart0 ± 00 of 4 0.34None
Fat body0 ± 00 of 4 0.36None
Ovary0 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.40None
Male accessory glands1 ± 00 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 1.42None
Mated spermatheca2 ± 10 of 4 1.30None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS0 ± 00 of 4 0.25None
Larval Salivary gland2 ± 10 of 4 1.24None
Larval midgut33 ± 24 of 416.12Up
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut23 ± 14 of 411.33Up
Larval fat body2 ± 10 of 4 1.20None
Larval trachea0 ± 00 of 4 0.45None
Larval carcass0 ± 00 of 4 0.36None
S2 cells (growing)0 ± 00 of 4 0.25None
Whole fly2 ± 10 of 4

Looking for FBgn0036220. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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