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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036221 through 18771 annotations produced 1 hits



(CG11588):

Annotation Number : CG11588
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036221
Gbrowse : chr3L:11914665-11915551 (+) // 100.0 //
Probeset : 1625091_at
Accessions : protein= NP_648522;, nucleotide= NM_140265;
FlyMine data for FBgn0036221.
VDRC has 3 RNAi stocks for FBgn0036221 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head5 20 of 4 0.20Down
Eye1 00 of 4 0.04Down
Thoracicoabdominal ganglion6 10 of 4 0.20Down
Salivary gland6 30 of 4 0.21Down
Crop5 20 of 4 0.20Down
Midgut3 10 of 4 0.10Down
Tubule4 00 of 4 0.20Down
Hindgut3 10 of 4 0.10Down
Heart3 00 of 4 0.13Down
Fat body2 10 of 4 0.08Down
Ovary1 00 of 4 0.00Down
Testis419 314 of 413.80Up
Male accessory glands10 41 of 4 0.30Down
Virgin spermatheca4 00 of 4 0.13Down
Mated spermatheca4 00 of 4 0.14Down
Adult carcass5 20 of 4 0.20Down
Larval CNS3 10 of 4 0.12Down
Larval Salivary gland6 10 of 4 0.22Down
Larval midgut3 10 of 4 0.10Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut2 10 of 4 0.08Down
Larval fat body42 153 of 4 1.40None
Larval trachea3 50 of 4 0.12Down
Larval carcass1 00 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.06Down
Whole fly30 24 of 4

Looking for FBgn0036221. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime