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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036224 through 18771 annotations produced 1 hits



(Rpt4R):

Annotation Number : CG7257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036224
Gbrowse : chr3L:11935122-11936589 (+) // 100.0 //
Probeset : 1640638_at
Accessions : protein= NP_648525;, nucleotide= NM_140268;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005838 // proteasome regulatory particle // inferred fr
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0036224.
BDGP gene expression has embryonic in situ data for CG7257: 4 pix of staining in 1 body parts.
Homophila reports that CG7257 is a close match (2e-22) to human gene PAF2;PEX6;PXAAA1 (NP_000278), a gene associated with Peroxisomal biogenesis disorder, complementation group 4 (3);Peroxisomal biogenesis disorder, complementation group 6 (3).
BioGrid reports that CG7257 interacts with CG9588 .
VDRC has 3 RNAi stocks for FBgn0036224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 10 of 4 0.20Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland2 00 of 4 0.11Down
Crop3 20 of 4 0.20Down
Midgut10 10 of 4 0.50Down
Tubule2 00 of 4 0.10Down
Hindgut5 10 of 4 0.30Down
Heart3 21 of 4 0.18Down
Fat body5 30 of 4 0.26Down
Ovary3 10 of 4 0.20Down
Testis305 204 of 413.70Up
Male accessory glands4 10 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.13Down
Mated spermatheca0 00 of 4 0.04Down
Adult carcass7 10 of 4 0.30Down
Larval CNS1 10 of 4 0.08Down
Larval Salivary gland2 00 of 4 0.11Down
Larval midgut9 10 of 4 0.41Down
Larval tubule6 20 of 4 0.30Down
Larval hindgut1 00 of 4 0.05Down
Larval fat body53 174 of 4 2.40None
Larval trachea2 20 of 4 0.09Down
Larval carcass3 10 of 4 0.15Down
S2 cells (growing)4 20 of 4 0.21Down
Whole fly22 24 of 4

Looking for FBgn0036224. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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