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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036225 through 18771 annotations produced 1 hits



(CG5883):

Annotation Number : CG5883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036225
Gbrowse : chr3L:11936747-11937946 (-) // 100.0 //
Probeset : 1637889_at
Accessions : protein= NP_648526;, nucleotide= NM_140269;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016490 // structural constituent of peritrophic me
FlyMine data for FBgn0036225.
BDGP gene expression has embryonic in situ data for CG5883: 2 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0036225 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.50None
Head12 ± 10 of 4 2.30Up
Eye116 ± 174 of 420.46Up
Thoracicoabdominal ganglion0 ± 00 of 4 0.10None
Salivary gland6 ± 20 of 4 1.15None
Crop3 ± 10 of 4 0.50None
Midgut46 ± 34 of 4 8.20Up
Tubule1 ± 00 of 4 0.30Down
Hindgut6 ± 11 of 4 1.10None
Heart1 ± 10 of 4 0.25None
Fat body12 ± 70 of 4 2.12None
Ovary1 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.30None
Male accessory glands3 ± 10 of 4 0.70None
Virgin spermatheca6 ± 20 of 4 1.19None
Mated spermatheca10 ± 30 of 4 1.79None
Adult carcass1 ± 00 of 4 0.20None
Larval CNS4 ± 30 of 4 0.75None
Larval Salivary gland2 ± 10 of 4 0.45None
Larval midgut1233 ± 784 of 4216.34Up
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.36None
Larval fat body3 ± 20 of 4 0.60None
Larval trachea0 ± 00 of 4 0.09None
Larval carcass2 ± 10 of 4 0.37None
S2 cells (growing)0 ± 00 of 4 0.09None
Whole fly5 ± 11 of 4

Looking for FBgn0036225. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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