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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036226 through 18771 annotations produced 1 hits



(CG7252):

Annotation Number : CG7252
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036226
Gbrowse : chr3L:11940785-11942349 (+) // 100.0 //
Probeset : 1623328_at
Accessions : protein= NP_648527;, nucleotide= NM_140270;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016490 // structural constituent of peritrophic me
FlyMine data for FBgn0036226.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.50None
Head5 21 of 4 1.30None
Eye13 02 of 4 3.50Up
Thoracicoabdominal ganglion8 10 of 4 2.20Up
Salivary gland4 10 of 4 1.13None
Crop5 20 of 4 1.30None
Midgut17 22 of 4 4.40Up
Tubule6 00 of 4 1.50Up
Hindgut7 10 of 4 1.80None
Heart1 00 of 4 0.29None
Fat body4 30 of 4 1.25None
Ovary2 10 of 4 0.60None
Testis4 10 of 4 1.00None
Male accessory glands4 20 of 4 1.10None
Virgin spermatheca4 10 of 4 1.17None
Mated spermatheca5 10 of 4 1.31None
Adult carcass8 10 of 4 2.10Up
Larval CNS1 00 of 4 0.25None
Larval Salivary gland5 20 of 4 1.45None
Larval midgut2129 924 of 4542.61Up
Larval tubule4 20 of 4 1.10None
Larval hindgut7 11 of 4 1.86None
Larval fat body2 10 of 4 0.70None
Larval trachea4 30 of 4 1.21None
Larval carcass2 10 of 4 0.68None
S2 cells (growing)3 10 of 4 0.85None
Whole fly3 10 of 4

Looking for FBgn0036226. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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