Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036227 through 18771 annotations produced 1 hits



(CG17826):

Annotation Number : CG17826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036227
Gbrowse : chr3L:11942940-11945325 (+) // 100.0 //
Probeset : 1627889_at
Accessions : protein= NP_648528;, nucleotide= NM_140271;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0036227.
BDGP gene expression has embryonic in situ data for CG17826: 4 pix of staining in 1 body parts.
BioGrid reports that CG17826 interacts with CG30118 CG3654 CG3751 CG4087 CG4225 CG4863 CG4949 CG5711 CG6510 CG7181 CG9075 CG9526 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 CG17757 .
VDRC has 1 RNAi stocks for FBgn0036227 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50Down
Head4 ± 10 of 4 0.60None
Eye4 ± 21 of 4 0.62None
Thoracicoabdominal ganglion3 ± 00 of 4 0.50Down
Salivary gland5 ± 30 of 4 0.68None
Crop4 ± 10 of 4 0.60None
Midgut15 ± 20 of 4 2.10Up
Tubule4 ± 00 of 4 0.60Down
Hindgut7 ± 11 of 4 0.90None
Heart4 ± 00 of 4 0.64None
Fat body9 ± 10 of 4 1.33None
Ovary3 ± 00 of 4 0.40Down
Testis7 ± 00 of 4 0.90None
Male accessory glands13 ± 31 of 4 1.80None
Virgin spermatheca3 ± 00 of 4 0.47Down
Mated spermatheca8 ± 20 of 4 1.09None
Adult carcass4 ± 10 of 4 0.60None
Larval CNS4 ± 20 of 4 0.61None
Larval Salivary gland10 ± 20 of 4 1.40None
Larval midgut5378 ± 1654 of 4729.35Up
Larval tubule6 ± 10 of 4 0.80None
Larval hindgut12 ± 23 of 4 1.72None
Larval fat body8 ± 30 of 4 1.10None
Larval trachea7 ± 13 of 4 0.97None
Larval carcass7 ± 21 of 4 1.07None
S2 cells (growing)7 ± 10 of 4 1.06None
Whole fly7 ± 00 of 4

Looking for FBgn0036227. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime