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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036229 through 18771 annotations produced 1 hits



(CG7248):

Annotation Number : CG7248
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036229
Gbrowse : chr3L:11947185-11949884 (+) // 100.0 //
Probeset : 1626704_at
Accessions : protein= NP_648530;, nucleotide= NM_140273;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016490 // structural constituent of peritrophic me
FlyMine data for FBgn0036229.
BDGP gene expression has embryonic in situ data for CG7248: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.50None
Head7 ± 21 of 4 2.00None
Eye3 ± 10 of 4 0.92None
Thoracicoabdominal ganglion6 ± 10 of 4 1.80None
Salivary gland13 ± 10 of 4 3.58Up
Crop5 ± 00 of 4 1.50None
Midgut10 ± 32 of 4 2.80None
Tubule4 ± 10 of 4 1.30None
Hindgut5 ± 11 of 4 1.50None
Heart3 ± 10 of 4 1.02None
Fat body7 ± 40 of 4 2.14None
Ovary1 ± 00 of 4 0.30Down
Testis1 ± 00 of 4 0.40Down
Male accessory glands11 ± 30 of 4 3.00None
Virgin spermatheca3 ± 00 of 4 1.05None
Mated spermatheca3 ± 10 of 4 0.83None
Adult carcass10 ± 30 of 4 2.90None
Larval CNS4 ± 20 of 4 1.31None
Larval Salivary gland6 ± 10 of 4 1.68None
Larval midgut1008 ± 564 of 4276.35Up
Larval tubule6 ± 10 of 4 1.90Up
Larval hindgut6 ± 11 of 4 1.66None
Larval fat body6 ± 20 of 4 1.80None
Larval trachea2 ± 10 of 4 0.69None
Larval carcass6 ± 10 of 4 1.91Up
S2 cells (growing)3 ± 10 of 4 0.86None
Whole fly3 ± 00 of 4

Looking for FBgn0036229. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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