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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036230 through 18771 annotations produced 1 hits



(CG11570):

Annotation Number : CG11570
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036230
Gbrowse : chr3L:11949913-11950591 (-) // 100.0 //
Probeset : 1629910_at
Accessions : protein= NP_648531;, nucleotide= NM_140274;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0036230.
BioGrid reports that CG11570 interacts with CG9522 CG12723 CG4818 CG5248 CG9653 .
VDRC has 4 RNAi stocks for FBgn0036230 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.60None
Head8 00 of 4 0.90None
Eye2 00 of 4 0.25Down
Thoracicoabdominal ganglion12 22 of 4 1.20None
Salivary gland24 31 of 4 2.43Up
Crop14 02 of 4 1.40Up
Midgut25 14 of 4 2.50Up
Tubule9 01 of 4 1.00None
Hindgut11 12 of 4 1.10None
Heart2 00 of 4 0.21Down
Fat body14 14 of 4 1.38Up
Ovary5 01 of 4 0.60Down
Testis8 01 of 4 0.90None
Male accessory glands12 20 of 4 1.20None
Virgin spermatheca11 13 of 4 1.10None
Mated spermatheca10 12 of 4 1.06None
Adult carcass23 40 of 4 2.40Up
Larval CNS6 12 of 4 0.65Down
Larval Salivary gland13 12 of 4 1.37Up
Larval midgut16 11 of 4 1.61Up
Larval tubule9 21 of 4 1.00None
Larval hindgut11 13 of 4 1.09None
Larval fat body13 11 of 4 1.40None
Larval trachea6 22 of 4 0.63Down
Larval carcass11 13 of 4 1.14None
S2 cells (growing)7 03 of 4 0.75None
Whole fly10 03 of 4

Looking for FBgn0036230. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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