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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036232 through 18771 annotations produced 1 hits



(CG14125):

Annotation Number : CG14125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036232
Gbrowse : chr3L:11968009-11968859 (+) // 100.0 //
Probeset : 1637002_at
Accessions : protein= NP_648532;, nucleotide= NM_140275;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0036232.
VDRC has 3 RNAi stocks for FBgn0036232 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head267 ± 1473 of 4 0.30Down
Eye5 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland9 ± 20 of 4 0.01Down
Crop44 ± 252 of 4 0.10Down
Midgut5202 ± 1084 of 4 6.10Up
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.00Down
Fat body3 ± 10 of 4 0.00Down
Ovary2 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 21 of 4 0.00Down
Mated spermatheca2 ± 10 of 4 0.00Down
Adult carcass34 ± 242 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland6 ± 20 of 4 0.01Down
Larval midgut51 ± 21 of 4 0.06Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut5 ± 11 of 4 0.01Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.00Down
Larval carcass2 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly848 ± 1474 of 4

Looking for FBgn0036232. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime