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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036235 through 18771 annotations produced 1 hits



(CG6938):

Annotation Number : CG6938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036235
Gbrowse : chr3L:11979073-11983444 (+) // 100.0 //
Probeset : 1630607_at
Accessions : protein= NP_648535;, nucleotide= NM_140278;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferre
FlyMine data for FBgn0036235.
Homophila reports that CG6938 is a close match (0) to human gene GDD1;TMEM16E (NP_998764), a gene associated with Gnthodiaphyseal dysplasia, 166260 (3).
VDRC has 3 RNAi stocks for FBgn0036235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head14 ± 14 of 4 2.40Up
Eye2 ± 10 of 4 0.43None
Thoracicoabdominal ganglion1 ± 10 of 4 0.30Down
Salivary gland6 ± 20 of 4 1.01None
Crop5 ± 21 of 4 0.90None
Midgut1 ± 00 of 4 0.20Down
Tubule4 ± 00 of 4 0.60Down
Hindgut7 ± 11 of 4 1.10None
Heart2 ± 00 of 4 0.43None
Fat body9 ± 21 of 4 1.49None
Ovary1 ± 00 of 4 0.20Down
Testis4 ± 00 of 4 0.70None
Male accessory glands2 ± 10 of 4 0.40None
Virgin spermatheca7 ± 01 of 4 1.21None
Mated spermatheca7 ± 11 of 4 1.14None
Adult carcass11 ± 20 of 4 1.80None
Larval CNS1 ± 10 of 4 0.23Down
Larval Salivary gland3 ± 20 of 4 0.59None
Larval midgut2 ± 10 of 4 0.36None
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut2 ± 10 of 4 0.37None
Larval fat body6 ± 21 of 4 1.00None
Larval trachea1 ± 10 of 4 0.19Down
Larval carcass3 ± 00 of 4 0.56None
S2 cells (growing)2 ± 00 of 4 0.40None
Whole fly6 ± 10 of 4

Looking for FBgn0036235. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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