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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036236 through 18771 annotations produced 1 hits



(CG6931):

Annotation Number : CG6931
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036236
Gbrowse : chr3L:11983843-11985101 (+) // 100.0 //
Probeset : 1639782_at
Accessions : protein= NP_648536;, nucleotide= NM_140279;
FlyMine data for FBgn0036236.
VDRC has 5 RNAi stocks for FBgn0036236 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.20Down
Head2 ± 10 of 4 0.10Down
Eye4 ± 00 of 4 0.24Down
Thoracicoabdominal ganglion5 ± 11 of 4 0.30Down
Salivary gland15 ± 32 of 4 0.79None
Crop5 ± 11 of 4 0.30Down
Midgut7 ± 13 of 4 0.40Down
Tubule4 ± 00 of 4 0.20Down
Hindgut2 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.18Down
Fat body4 ± 30 of 4 0.21Down
Ovary2 ± 01 of 4 0.10Down
Testis226 ± 24 of 411.40Up
Male accessory glands8 ± 21 of 4 0.40Down
Virgin spermatheca6 ± 11 of 4 0.35Down
Mated spermatheca6 ± 02 of 4 0.33Down
Adult carcass10 ± 21 of 4 0.50Down
Larval CNS4 ± 01 of 4 0.20Down
Larval Salivary gland7 ± 10 of 4 0.38Down
Larval midgut8 ± 11 of 4 0.41Down
Larval tubule3 ± 00 of 4 0.20Down
Larval hindgut3 ± 11 of 4 0.19Down
Larval fat body26 ± 94 of 4 1.30None
Larval trachea3 ± 20 of 4 0.19Down
Larval carcass6 ± 22 of 4 0.31Down
S2 cells (growing)2 ± 00 of 4 0.12Down
Whole fly19 ± 14 of 4

Looking for FBgn0036236. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime