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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036237 through 18771 annotations produced 1 hits



viral IAP-associated factor (viaf):

Annotation Number : CG18593
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036237
Gbrowse : chr3L:11984952-11986279 (-) // 100.0 //
Probeset : 1631137_at
Accessions : protein= NP_524032;, nucleotide= NM_079308;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity
FlyMine data for FBgn0036237.
BDGP gene expression has embryonic in situ data for viaf1: 14 pix of staining in 5 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain442 ± 94 of 4 2.00Up
Head181 ± 74 of 4 0.80None
Eye251 ± 184 of 4 1.12None
Thoracicoabdominal ganglion328 ± 94 of 4 1.50Up
Salivary gland91 ± 54 of 4 0.41Down
Crop400 ± 84 of 4 1.80Up
Midgut202 ± 64 of 4 0.90None
Tubule107 ± 34 of 4 0.50Down
Hindgut160 ± 54 of 4 0.70Down
Heart165 ± 214 of 4 0.73None
Fat body82 ± 154 of 4 0.37Down
Ovary403 ± 124 of 4 1.80Up
Testis127 ± 74 of 4 0.60Down
Male accessory glands115 ± 114 of 4 0.50Down
Virgin spermatheca74 ± 34 of 4 0.33Down
Mated spermatheca104 ± 84 of 4 0.47Down
Adult carcass126 ± 24 of 4 0.60Down
Larval CNS410 ± 234 of 4 1.82Up
Larval Salivary gland217 ± 104 of 4 0.97None
Larval midgut223 ± 254 of 4 0.99None
Larval tubule164 ± 44 of 4 0.70Down
Larval hindgut251 ± 144 of 4 1.12None
Larval fat body188 ± 144 of 4 0.80None
Larval trachea302 ± 654 of 4 1.35None
Larval carcass360 ± 594 of 4 1.60None
S2 cells (growing)364 ± 134 of 4 1.62Up
Whole fly225 ± 174 of 4

Looking for FBgn0036237. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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