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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036239 through 18771 annotations produced 1 hits



Pop2 (Pop2):

Annotation Number : CG5684
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036239
Gbrowse : chr3L:11991497-11996013 (-) // 100.0 //
Probeset : 1634474_s_at
Accessions : protein= NP_001163429; /// NP_648538; /// NP_729775; /// NP_729776;, nucleotide= NM_001169958; /// NM_140281; /// NM_168484; /// NM_168485;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0016251 // general RNA polymerase II transcri
FlyMine data for FBgn0036239.
BDGP gene expression has embryonic in situ data for CG5684: 5 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0036239 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036239 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain500 ± 84 of 4 1.30Up
Head342 ± 104 of 4 0.90Down
Eye407 ± 114 of 4 1.04None
Thoracicoabdominal ganglion451 ± 64 of 4 1.10Up
Salivary gland467 ± 194 of 4 1.19Up
Crop335 ± 14 of 4 0.90Down
Midgut347 ± 64 of 4 0.90Down
Tubule244 ± 74 of 4 0.60Down
Hindgut317 ± 44 of 4 0.80Down
Heart267 ± 54 of 4 0.68Down
Fat body181 ± 174 of 4 0.46Down
Ovary515 ± 84 of 4 1.30Up
Testis775 ± 154 of 4 2.00Up
Male accessory glands419 ± 84 of 4 1.10None
Virgin spermatheca237 ± 54 of 4 0.60Down
Mated spermatheca243 ± 114 of 4 0.62Down
Adult carcass222 ± 74 of 4 0.60Down
Larval CNS526 ± 244 of 4 1.34Up
Larval Salivary gland224 ± 274 of 4 0.57Down
Larval midgut226 ± 124 of 4 0.58Down
Larval tubule335 ± 74 of 4 0.90Down
Larval hindgut275 ± 34 of 4 0.70Down
Larval fat body349 ± 154 of 4 0.90None
Larval trachea353 ± 204 of 4 0.90Down
Larval carcass264 ± 84 of 4 0.67Down
S2 cells (growing)395 ± 44 of 4 1.01None
Whole fly392 ± 94 of 4

Looking for FBgn0036239. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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