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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036242 through 18771 annotations produced 1 hits



(CG6793):

Annotation Number : CG6793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036242
Gbrowse : chr3L:12035509-12037265 (+) // 100.0 //
Probeset : 1628115_at
Accessions : protein= NP_648541;, nucleotide= NM_140284;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
FlyMine data for FBgn0036242.
VDRC has 1 RNAi stocks for FBgn0036242 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head1 00 of 4 0.40None
Eye0 00 of 4 0.35None
Thoracicoabdominal ganglion3 10 of 4 1.10None
Salivary gland3 00 of 4 1.16None
Crop6 20 of 4 2.50None
Midgut1 00 of 4 0.60None
Tubule2 00 of 4 1.00None
Hindgut2 00 of 4 0.80None
Heart0 00 of 4 0.32None
Fat body1 00 of 4 0.47None
Ovary1 00 of 4 0.70None
Testis1 00 of 4 0.40None
Male accessory glands60 73 of 423.20Up
Virgin spermatheca1 00 of 4 0.67None
Mated spermatheca3 00 of 4 1.21None
Adult carcass2 00 of 4 1.00None
Larval CNS1 00 of 4 0.43None
Larval Salivary gland1 00 of 4 0.62None
Larval midgut1 00 of 4 0.46None
Larval tubule1 00 of 4 0.60None
Larval hindgut3 10 of 4 1.16None
Larval fat body2 00 of 4 0.90None
Larval trachea4 20 of 4 1.55None
Larval carcass2 00 of 4 0.93None
S2 cells (growing)1 00 of 4 0.55None
Whole fly2 10 of 4

Looking for FBgn0036242. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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