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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036250 through 18771 annotations produced 1 hits



CG17152 (Ir68b):

Annotation Number : CG17152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036250
Gbrowse : chr3L:12118586-12120494 (-) // 100.0 //
Probeset : 1634498_at
Accessions : protein= NP_648548;, nucleotide= NM_140291;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0036250.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.90None
Head3 10 of 4 0.70None
Eye3 00 of 4 0.69None
Thoracicoabdominal ganglion5 10 of 4 1.00None
Salivary gland18 31 of 4 3.41Up
Crop6 10 of 4 1.20None
Midgut8 20 of 4 1.60None
Tubule7 00 of 4 1.40Up
Hindgut7 00 of 4 1.40None
Heart4 00 of 4 0.76None
Fat body11 10 of 4 2.21Up
Ovary5 10 of 4 1.00None
Testis2 00 of 4 0.50None
Male accessory glands7 20 of 4 1.50None
Virgin spermatheca3 10 of 4 0.72None
Mated spermatheca7 00 of 4 1.43None
Adult carcass8 10 of 4 1.50None
Larval CNS6 10 of 4 1.14None
Larval Salivary gland15 21 of 4 2.89Up
Larval midgut12 10 of 4 2.25Up
Larval tubule6 10 of 4 1.20None
Larval hindgut10 00 of 4 1.87Up
Larval fat body11 30 of 4 2.10None
Larval trachea5 10 of 4 1.03None
Larval carcass8 21 of 4 1.52None
S2 cells (growing)8 10 of 4 1.63None
Whole fly5 01 of 4

Looking for FBgn0036250. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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