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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036255 through 18771 annotations produced 1 hits



Autophagy-specific gene 12 (Atg12):

Annotation Number : CG10861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036255
Gbrowse : chr3L:12130179-12130607 (+) // 100.0 //
Probeset : 1633586_at
Accessions : protein= NP_648551;, nucleotide= NM_140294;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement
FlyMine data for FBgn0036255.
TRiP has 2 RNAi stocks for FBgn0036255 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036255 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain411 94 of 4 2.20Up
Head255 64 of 4 1.40Up
Eye397 264 of 4 2.14Up
Thoracicoabdominal ganglion383 224 of 4 2.10Up
Salivary gland186 214 of 4 1.01None
Crop194 44 of 4 1.00None
Midgut165 64 of 4 0.90None
Tubule63 84 of 4 0.30Down
Hindgut159 114 of 4 0.90None
Heart179 124 of 4 0.97None
Fat body122 214 of 4 0.66Down
Ovary239 74 of 4 1.30Up
Testis91 64 of 4 0.50Down
Male accessory glands107 74 of 4 0.60Down
Virgin spermatheca73 24 of 4 0.40Down
Mated spermatheca77 74 of 4 0.42Down
Adult carcass135 64 of 4 0.70Down
Larval CNS245 124 of 4 1.33Up
Larval Salivary gland192 114 of 4 1.04None
Larval midgut96 174 of 4 0.52Down
Larval tubule161 54 of 4 0.90Down
Larval hindgut121 134 of 4 0.65Down
Larval fat body79 64 of 4 0.40Down
Larval trachea167 254 of 4 0.91None
Larval carcass101 34 of 4 0.55Down
S2 cells (growing)86 34 of 4 0.47Down
Whole fly185 14 of 4

Looking for FBgn0036255. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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