FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036258 through 18771 annotations produced 1 hits

(CG5642):

Annotation Number : CG5642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036258
Gbrowse : chr3L:12136545-12139215 (-) // 99.78 //
Probeset : 1631527_at
Accessions : protein= NP_648553;, nucleotide= NM_140296;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005488 // binding // infer
FlyMine data for FBgn0036258.
BDGP gene expression has embryonic in situ data for CG5642: 4 pix of staining in 1 body parts.
BioGrid reports that CG5642 interacts with CG5892 CG5903 CG6647 CG6779 CG7856 CG8198 CG8280 CG8793 CG8831 CG9238 .
VDRC has 3 RNAi stocks for FBgn0036258 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1068 ± 20	4 of 4	0.90	None
Head	1231 ± 56	4 of 4	1.10	None
Eye	2133 ± 84	4 of 4	1.90	Up
Thoracicoabdominal ganglion	1822 ± 52	4 of 4	1.60	Up
Salivary gland	1241 ± 40	4 of 4	1.10	None
Crop	1205 ± 12	4 of 4	1.10	None
Midgut	724 ± 9	4 of 4	0.60	Down
Tubule	847 ± 22	4 of 4	0.80	Down
Hindgut	1028 ± 14	4 of 4	0.90	None
Heart	1099 ± 72	4 of 4	0.98	None
Fat body	1595 ± 46	4 of 4	1.42	Up
Ovary	1286 ± 9	4 of 4	1.10	None
Testis	504 ± 13	4 of 4	0.40	Down
Male accessory glands	2594 ± 136	4 of 4	2.30	Up
Virgin spermatheca	1873 ± 65	4 of 4	1.66	Up
Mated spermatheca	1836 ± 70	4 of 4	1.63	Up
Adult carcass	1050 ± 49	4 of 4	0.90	None
Larval CNS	1270 ± 81	4 of 4	1.13	None
Larval Salivary gland	1750 ± 103	4 of 4	1.56	Up
Larval midgut	639 ± 19	4 of 4	0.57	Down
Larval tubule	1322 ± 45	4 of 4	1.20	Up
Larval hindgut	1276 ± 17	4 of 4	1.13	None
Larval fat body	1313 ± 116	4 of 4	1.20	None
Larval trachea	1403 ± 50	4 of 4	1.25	Up
Larval carcass	1087 ± 27	4 of 4	0.97	None
S2 cells (growing)	1596 ± 26	4 of 4	1.42	Up
Whole fly	1125 ± 61	4 of 4

Looking for FBgn0036258. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720