Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036260 through 18771 annotations produced 2 hits



rhodopsin (Rh7):

Annotation Number : CG5638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036260
Gbrowse : chr3L:12157304-12168582 (-) // 99.9 //
Probeset : 1635912_at
Accessions : protein= NP_524035;, nucleotide= NM_079311;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0036260.
BDGP gene expression has embryonic in situ data for Rh7: 6 pix of staining in 1 body parts.
Homophila reports that CG5638 is a close match (8e-11) to human gene GHSR (NP_940799), a gene associated with Short stature, 604271 (3).
VDRC has 2 RNAi stocks for FBgn0036260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 ± 44 of 431.00Up
Head44 ± 34 of 4 8.80Up
Eye185 ± 34 of 436.40Up
Thoracicoabdominal ganglion55 ± 34 of 410.90Up
Salivary gland11 ± 21 of 4 2.17None
Crop9 ± 13 of 4 1.80None
Midgut2 ± 00 of 4 0.50Down
Tubule1 ± 00 of 4 0.30Down
Hindgut3 ± 01 of 4 0.60None
Heart3 ± 00 of 4 0.63None
Fat body6 ± 31 of 4 1.24None
Ovary1 ± 00 of 4 0.20Down
Testis6 ± 12 of 4 1.40None
Male accessory glands5 ± 00 of 4 1.00None
Virgin spermatheca5 ± 02 of 4 1.16None
Mated spermatheca6 ± 11 of 4 1.22None
Adult carcass6 ± 10 of 4 1.30None
Larval CNS21 ± 14 of 4 4.23Up
Larval Salivary gland1 ± 00 of 4 0.25Down
Larval midgut1 ± 00 of 4 0.29Down
Larval tubule2 ± 00 of 4 0.40Down
Larval hindgut1 ± 00 of 4 0.34Down
Larval fat body7 ± 21 of 4 1.50None
Larval trachea5 ± 52 of 4 1.02None
Larval carcass2 ± 00 of 4 0.45Down
S2 cells (growing)0 ± 00 of 4 0.19Down
Whole fly5 ± 02 of 4



rhodopsin (Rh7):

Annotation Number : S.C3L001582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036260
Gbrowse : chr3L:12161560-12161738 (-) // 100.0 //
Probeset : 1629596_s_at
Accessions : protein= NP_524035;, nucleotide= NM_079311;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0036260.
BDGP gene expression has embryonic in situ data for Rh7: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 1.40None
Head11 ± 30 of 4 1.90None
Eye4 ± 10 of 4 0.77None
Thoracicoabdominal ganglion9 ± 30 of 4 1.50None
Salivary gland15 ± 50 of 4 2.55None
Crop10 ± 40 of 4 1.80None
Midgut8 ± 20 of 4 1.40None
Tubule8 ± 00 of 4 1.40Up
Hindgut6 ± 30 of 4 1.10None
Heart6 ± 10 of 4 1.12None
Fat body13 ± 60 of 4 2.23None
Ovary2 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.30None
Male accessory glands7 ± 30 of 4 1.30None
Virgin spermatheca8 ± 20 of 4 1.47None
Mated spermatheca5 ± 20 of 4 0.93None
Adult carcass8 ± 40 of 4 1.50None
Larval CNS5 ± 30 of 4 1.01None
Larval Salivary gland8 ± 10 of 4 1.43None
Larval midgut4 ± 10 of 4 0.75None
Larval tubule5 ± 10 of 4 0.90None
Larval hindgut1 ± 00 of 4 0.28None
Larval fat body16 ± 50 of 4 2.80None
Larval trachea7 ± 40 of 4 1.30None
Larval carcass2 ± 00 of 4 0.44None
S2 cells (growing)10 ± 20 of 4 1.76None
Whole fly5 ± 10 of 4

Looking for FBgn0036260. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime