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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036262 through 18771 annotations produced 1 hits



(CG6910):

Annotation Number : CG6910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036262
Gbrowse : chr3L:12179057-12180933 (+) // 100.0 //
Probeset : 1639424_at
Accessions : protein= NP_648556;, nucleotide= NM_140299;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005506 // iron ion binding // inferred from electronic annotation /// 0050113 // inositol oxygenase activity // inferre
FlyMine data for FBgn0036262.
BDGP gene expression has embryonic in situ data for CG6910: 41 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0036262 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain191 124 of 4 0.50Down
Head881 1314 of 4 2.20Up
Eye190 354 of 4 0.47Down
Thoracicoabdominal ganglion388 284 of 4 1.00None
Salivary gland33 23 of 4 0.08Down
Crop100 174 of 4 0.20Down
Midgut9 11 of 4 0.00Down
Tubule59 144 of 4 0.10Down
Hindgut189 344 of 4 0.50Down
Heart2221 1234 of 4 5.51Up
Fat body2741 1594 of 4 6.80Up
Ovary7 03 of 4 0.00Down
Testis17 24 of 4 0.00Down
Male accessory glands12 22 of 4 0.00Down
Virgin spermatheca4562 924 of 411.32Up
Mated spermatheca4042 1534 of 410.03Up
Adult carcass1334 584 of 4 3.30Up
Larval CNS8 24 of 4 0.02Down
Larval Salivary gland18 24 of 4 0.05Down
Larval midgut8 22 of 4 0.02Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut20 44 of 4 0.05Down
Larval fat body671 1074 of 4 1.70None
Larval trachea15 24 of 4 0.04Down
Larval carcass56 54 of 4 0.14Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly403 384 of 4

Looking for FBgn0036262. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime