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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036263 through 18771 annotations produced 1 hits

thoc6 (thoc6):

Annotation Number : CG5632
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036263
Gbrowse : chr3L:12185124-12186787 (-) // 100.0 //
Probeset : 1640904_at
Accessions : protein= NP_648557;, nucleotide= NM_140300;
Pathway : 0000347 // THO complex // inferred from direct assay
FlyMine data for FBgn0036263.
BDGP gene expression has embryonic in situ data for CG5632: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036263 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 04 of 4 1.00None
Head17 24 of 4 0.90None
Eye17 54 of 4 0.93None
Thoracicoabdominal ganglion16 24 of 4 0.90None
Salivary gland29 23 of 4 1.58Up
Crop14 23 of 4 0.80None
Midgut14 04 of 4 0.80None
Tubule14 13 of 4 0.80Down
Hindgut12 14 of 4 0.70Down
Heart6 02 of 4 0.36Down
Fat body13 54 of 4 0.75None
Ovary19 24 of 4 1.00None
Testis8 13 of 4 0.40Down
Male accessory glands13 43 of 4 0.70None
Virgin spermatheca8 04 of 4 0.47Down
Mated spermatheca14 14 of 4 0.78None
Adult carcass12 12 of 4 0.70Down
Larval CNS28 34 of 4 1.53Up
Larval Salivary gland17 44 of 4 0.92None
Larval midgut12 14 of 4 0.69Down
Larval tubule18 04 of 4 1.00None
Larval hindgut18 14 of 4 0.98None
Larval fat body11 21 of 4 0.60Down
Larval trachea27 64 of 4 1.47None
Larval carcass62 34 of 4 3.37Up
S2 cells (growing)28 14 of 4 1.55Up
Whole fly18 14 of 4

Looking for FBgn0036263. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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