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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036271 through 18771 annotations produced 1 hits



Porphobilinogen synthase (Pbgs):

Annotation Number : CG10335
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036271
Gbrowse : chr3L:12263061-12264430 (-) // 100.0 //
Probeset : 1633523_at
Accessions : protein= NP_648564;, nucleotide= NM_140307;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004655 // porphobilinogen synthase activity //
FlyMine data for FBgn0036271.
BDGP gene expression has embryonic in situ data for CG10335: 18 pix of staining in 16 body parts.
Homophila reports that CG10335 is a close match (4e-103) to human gene ALAD (NP_001003945), a gene associated with Porphyria, acute hepatic (3);{Lead poisoning, susceptibility to} (3).
BioGrid reports that CG10335 interacts with CG10335 CG14666 CG1635 .
VDRC has 4 RNAi stocks for FBgn0036271 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 34 of 4 0.40Down
Head63 ± 94 of 4 0.50Down
Eye51 ± 54 of 4 0.40Down
Thoracicoabdominal ganglion36 ± 54 of 4 0.30Down
Salivary gland72 ± 64 of 4 0.58Down
Crop97 ± 44 of 4 0.80Down
Midgut270 ± 114 of 4 2.10Up
Tubule70 ± 54 of 4 0.60Down
Hindgut130 ± 24 of 4 1.00None
Heart623 ± 434 of 4 4.94Up
Fat body476 ± 444 of 4 3.77Up
Ovary122 ± 14 of 4 1.00None
Testis17 ± 10 of 4 0.10Down
Male accessory glands203 ± 154 of 4 1.60Up
Virgin spermatheca41 ± 34 of 4 0.33Down
Mated spermatheca52 ± 44 of 4 0.41Down
Adult carcass282 ± 254 of 4 2.20Up
Larval CNS61 ± 104 of 4 0.49Down
Larval Salivary gland240 ± 234 of 4 1.90Up
Larval midgut184 ± 104 of 4 1.46Up
Larval tubule110 ± 64 of 4 0.90None
Larval hindgut124 ± 44 of 4 0.99None
Larval fat body81 ± 44 of 4 0.60Down
Larval trachea335 ± 94 of 4 2.66Up
Larval carcass882 ± 364 of 4 6.99Up
S2 cells (growing)278 ± 44 of 4 2.20Up
Whole fly126 ± 74 of 4

Looking for FBgn0036271. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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