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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036278 through 18771 annotations produced 1 hits

Drosophila Corazonin Receptor (GRHRII):

Annotation Number : CG10698
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036278
Gbrowse : chr3L:12332211-12344636 (-) // 100.0 //
Probeset : 1629066_at
Accessions : protein= NP_648571;, nucleotide= NM_140314;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016021 // integral to mem
Interpro : 0001653 // peptide receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred
FlyMine data for FBgn0036278.
BDGP gene expression has embryonic in situ data for GRHRII: 11 pix of staining in 3 body parts.
Homophila reports that CG10698 is a close match (8e-11) to human gene OPRM1 (NP_001008505), a gene associated with [Response to morphine-6-glucuronide] (3);{Epilepsy, idiopathic generalized, susceptibility to}, 600669 (3).
TRiP has 2 RNAi stocks for FBgn0036278 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036278 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 34 of 4 0.80Down
Head71 84 of 4 1.00None
Eye39 14 of 4 0.55Down
Thoracicoabdominal ganglion40 24 of 4 0.50Down
Salivary gland138 84 of 4 1.90Up
Crop11 14 of 4 0.20Down
Midgut1 00 of 4 0.00Down
Tubule4 10 of 4 0.10Down
Hindgut6 11 of 4 0.10Down
Heart405 544 of 4 5.56Up
Fat body578 574 of 4 7.93Up
Ovary0 00 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca8 11 of 4 0.11Down
Mated spermatheca10 32 of 4 0.14Down
Adult carcass409 204 of 4 5.60Up
Larval CNS77 94 of 4 1.07None
Larval Salivary gland979 404 of 413.43Up
Larval midgut3 00 of 4 0.04Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut5 11 of 4 0.07Down
Larval fat body5 10 of 4 0.10Down
Larval trachea10 42 of 4 0.14Down
Larval carcass10 22 of 4 0.15Down
S2 cells (growing)2 01 of 4 0.04Down
Whole fly72 34 of 4

Looking for FBgn0036278. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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