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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036279 through 18771 annotations produced 1 hits



Heat shock protein 60 related /// sodium chloride cotransporter 69 (Hsp60B /// Ncc69):

Annotation Number : CG4357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036279
Gbrowse : chr3L:12361745-12384515 (-) // 100.0 //
Probeset : 1626461_at
Accessions : protein= NP_524925; /// NP_648572; /// NP_996066;, nucleotide= NM_080186; /// NM_140315; /// NM_206344;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0036279.
Homophila reports that CG4357 is a close match (2e-52) to human gene ACCPN;KCC3;KCC3A;KCC3B;SLC12A6 (NP_598408), a gene associated with Agenesis of the corpus callosum with peripheral neuropathy, 218000 (3).
TRiP has 1 RNAi stocks for FBgn0036279 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 ± 64 of 4 2.30Up
Head197 ± 294 of 4 2.80Up
Eye734 ± 1404 of 410.46Up
Thoracicoabdominal ganglion461 ± 194 of 4 6.60Up
Salivary gland10 ± 20 of 4 0.15Down
Crop207 ± 74 of 4 3.00Up
Midgut61 ± 24 of 4 0.90None
Tubule7 ± 10 of 4 0.10Down
Hindgut29 ± 34 of 4 0.40Down
Heart40 ± 24 of 4 0.58Down
Fat body14 ± 50 of 4 0.21Down
Ovary78 ± 34 of 4 1.10None
Testis97 ± 54 of 4 1.40Up
Male accessory glands260 ± 164 of 4 3.70Up
Virgin spermatheca169 ± 134 of 4 2.41Up
Mated spermatheca136 ± 204 of 4 1.94Up
Adult carcass127 ± 54 of 4 1.80Up
Larval CNS102 ± 134 of 4 1.46Up
Larval Salivary gland174 ± 74 of 4 2.49Up
Larval midgut87 ± 144 of 4 1.24None
Larval tubule16 ± 32 of 4 0.20Down
Larval hindgut74 ± 94 of 4 1.06None
Larval fat body26 ± 62 of 4 0.40Down
Larval trachea137 ± 264 of 4 1.95Up
Larval carcass163 ± 144 of 4 2.32Up
S2 cells (growing)23 ± 14 of 4 0.33Down
Whole fly70 ± 74 of 4

Looking for FBgn0036279. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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