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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036286 through 18771 annotations produced 1 hits



/// (CG10616 /// DsimCG10616):

Annotation Number : CG10616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036286
Gbrowse : chr3L:12464860-12467379 (+) // 100.0 //
Probeset : 1632202_at
Accessions : protein= NP_648576;, nucleotide= NM_140319;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036286.
BioGrid reports that CG10616 interacts with CG4955 CG9242 Dmel CG34383 .
TRiP has 1 RNAi stocks for FBgn0036286 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 ± 54 of 4 0.80Down
Head86 ± 44 of 4 0.60Down
Eye74 ± 34 of 4 0.47Down
Thoracicoabdominal ganglion98 ± 94 of 4 0.60Down
Salivary gland288 ± 174 of 4 1.84Up
Crop145 ± 54 of 4 0.90None
Midgut158 ± 64 of 4 1.00None
Tubule69 ± 24 of 4 0.40Down
Hindgut111 ± 44 of 4 0.70Down
Heart90 ± 34 of 4 0.58Down
Fat body97 ± 154 of 4 0.62Down
Ovary165 ± 44 of 4 1.10None
Testis775 ± 314 of 4 5.00Up
Male accessory glands172 ± 64 of 4 1.10None
Virgin spermatheca56 ± 34 of 4 0.36Down
Mated spermatheca67 ± 64 of 4 0.43Down
Adult carcass104 ± 14 of 4 0.70Down
Larval CNS98 ± 54 of 4 0.63Down
Larval Salivary gland458 ± 444 of 4 2.93Up
Larval midgut174 ± 24 of 4 1.11None
Larval tubule178 ± 54 of 4 1.10None
Larval hindgut185 ± 94 of 4 1.18None
Larval fat body314 ± 534 of 4 2.00None
Larval trachea146 ± 214 of 4 0.93None
Larval carcass165 ± 44 of 4 1.06None
S2 cells (growing)230 ± 74 of 4 1.47Up
Whole fly156 ± 104 of 4

Looking for FBgn0036286. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime