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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036287 through 18771 annotations produced 1 hits



(CG10663):

Annotation Number : CG10663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036287
Gbrowse : chr3L:12468106-12471189 (-) // 100.0 //
Probeset : 1637228_at
Accessions : protein= NP_001097592; /// NP_001097593; /// NP_648577;, nucleotide= NM_001104122; /// NM_001104123; /// NM_140320;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036287.
Homophila reports that CG10663 is a close match (3e-14) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
BioGrid reports that CG10663 interacts with CG17838 CG12794 CG2199 CG31794 CG3183 CG8280 CG8989 .
VDRC has 2 RNAi stocks for FBgn0036287 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.70None
Head7 00 of 4 1.00None
Eye3 00 of 4 0.45Down
Thoracicoabdominal ganglion4 10 of 4 0.60None
Salivary gland2 00 of 4 0.26Down
Crop25 04 of 4 3.30Up
Midgut3 20 of 4 0.50None
Tubule1 00 of 4 0.20Down
Hindgut7 00 of 4 1.00None
Heart3 10 of 4 0.46None
Fat body6 40 of 4 0.84None
Ovary2 10 of 4 0.30Down
Testis7 01 of 4 1.00None
Male accessory glands6 20 of 4 0.80None
Virgin spermatheca1 10 of 4 0.24Down
Mated spermatheca3 10 of 4 0.49None
Adult carcass23 41 of 4 3.10Up
Larval CNS1 10 of 4 0.18Down
Larval Salivary gland2 10 of 4 0.29Down
Larval midgut0 00 of 4 0.08Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut9 10 of 4 1.22None
Larval fat body2 10 of 4 0.40Down
Larval trachea85 54 of 411.28Up
Larval carcass9 10 of 4 1.21None
S2 cells (growing)12 10 of 4 1.62Up
Whole fly7 00 of 4

Looking for FBgn0036287. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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