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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036288 through 18771 annotations produced 1 hits



(CG10660):

Annotation Number : CG10660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036288
Gbrowse : chr3L:12479911-12483188 (-) // 100.0 //
Probeset : 1630113_at
Accessions : protein= NP_648578;, nucleotide= NM_140321;
FlyMine data for FBgn0036288.
BDGP gene expression has embryonic in situ data for CG10660: 10 pix of staining in 4 body parts.
VDRC has 1 RNAi stocks for FBgn0036288 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 24 of 4 1.30Up
Head36 ± 14 of 4 1.00None
Eye36 ± 14 of 4 1.01None
Thoracicoabdominal ganglion66 ± 14 of 4 1.80Up
Salivary gland202 ± 144 of 4 5.58Up
Crop64 ± 14 of 4 1.80Up
Midgut159 ± 24 of 4 4.40Up
Tubule150 ± 124 of 4 4.10Up
Hindgut139 ± 44 of 4 3.80Up
Heart33 ± 24 of 4 0.91None
Fat body63 ± 94 of 4 1.75Up
Ovary7 ± 20 of 4 0.20Down
Testis151 ± 04 of 4 4.20Up
Male accessory glands65 ± 54 of 4 1.80Up
Virgin spermatheca32 ± 24 of 4 0.89None
Mated spermatheca34 ± 24 of 4 0.95None
Adult carcass46 ± 34 of 4 1.30Up
Larval CNS19 ± 13 of 4 0.54Down
Larval Salivary gland37 ± 34 of 4 1.04None
Larval midgut112 ± 104 of 4 3.08Up
Larval tubule184 ± 74 of 4 5.10Up
Larval hindgut66 ± 24 of 4 1.83Up
Larval fat body83 ± 24 of 4 2.30Up
Larval trachea17 ± 24 of 4 0.48Down
Larval carcass23 ± 00 of 4 0.65Down
S2 cells (growing)38 ± 24 of 4 1.07None
Whole fly36 ± 24 of 4

Looking for FBgn0036288. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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