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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036290 through 18771 annotations produced 2 hits



(CG10638):

Annotation Number : CG32101
Flybase ID : FBgn0036290
Gbrowse : chr3L:12493305-12494142 (-) // 100.0 //
Probeset : 1634838_at
Accessions : protein= NP_001163431; /// NP_729808; /// NP_996068;, nucleotide= NM_001169960; /// NM_168501; /// NM_206346;
Interpro : 0004032 // aldehyde reductase activity // inferred from sequence or structural similarity /// 0004032 // aldehyde reduct
FlyMine data for FBgn0036290.
BDGP gene expression has embryonic in situ data for CG10638: 11 pix of staining in 16 body parts.
VDRC has 4 RNAi stocks for FBgn0036290 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 04 of 4 1.00None
Head19 04 of 4 1.50Up
Eye17 13 of 4 1.33None
Thoracicoabdominal ganglion10 13 of 4 0.80None
Salivary gland43 14 of 4 3.23Up
Crop9 03 of 4 0.70Down
Midgut6 10 of 4 0.50Down
Tubule10 11 of 4 0.80None
Hindgut10 12 of 4 0.80None
Heart10 12 of 4 0.80None
Fat body11 21 of 4 0.81None
Ovary30 24 of 4 2.30Up
Testis8 03 of 4 0.60Down
Male accessory glands7 20 of 4 0.60None
Virgin spermatheca4 10 of 4 0.36Down
Mated spermatheca7 10 of 4 0.54Down
Adult carcass14 31 of 4 1.10None
Larval CNS16 34 of 4 1.19None
Larval Salivary gland8 21 of 4 0.62None
Larval midgut5 20 of 4 0.44Down
Larval tubule14 23 of 4 1.10None
Larval hindgut7 10 of 4 0.55Down
Larval fat body10 11 of 4 0.80None
Larval trachea11 32 of 4 0.86None
Larval carcass6 10 of 4 0.49Down
S2 cells (growing)13 14 of 4 1.03None
Whole fly13 04 of 4



(CG10638):

Annotation Number : CG10638
Flybase ID : FBgn0036290
Gbrowse : chr3L:12491497-12494411 (-) // 100.0 //
Probeset : 1626801_at
Accessions : protein= NP_001163431; /// NP_729808; /// NP_996068;, nucleotide= NM_001169960; /// NM_168501; /// NM_206346;
Interpro : 0004032 // aldehyde reductase activity // inferred from sequence or structural similarity /// 0004032 // aldehyde reduct
FlyMine data for FBgn0036290.
BDGP gene expression has embryonic in situ data for CG10638: 11 pix of staining in 16 body parts.
Homophila reports that CG10638 is a close match (3e-56) to human gene (NP_005980), a gene associated with .
BioGrid reports that CG10638 interacts with CG11466 .
VDRC has 4 RNAi stocks for FBgn0036290 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 114 of 4 0.70Down
Head318 154 of 4 1.20Up
Eye354 694 of 4 1.35None
Thoracicoabdominal ganglion202 74 of 4 0.80Down
Salivary gland928 464 of 4 3.54Up
Crop284 154 of 4 1.10None
Midgut214 64 of 4 0.80Down
Tubule312 694 of 4 1.20None
Hindgut223 74 of 4 0.90Down
Heart357 34 of 4 1.36Up
Fat body310 424 of 4 1.18None
Ovary383 94 of 4 1.50Up
Testis162 54 of 4 0.60Down
Male accessory glands273 64 of 4 1.00None
Virgin spermatheca515 394 of 4 1.97Up
Mated spermatheca540 164 of 4 2.06Up
Adult carcass214 84 of 4 0.80Down
Larval CNS701 194 of 4 2.67Up
Larval Salivary gland560 254 of 4 2.14Up
Larval midgut178 154 of 4 0.68Down
Larval tubule408 354 of 4 1.60Up
Larval hindgut277 74 of 4 1.06None
Larval fat body387 504 of 4 1.50None
Larval trachea400 514 of 4 1.53Up
Larval carcass385 364 of 4 1.47Up
S2 cells (growing)389 74 of 4 1.49Up
Whole fly262 134 of 4

Looking for FBgn0036290. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime