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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036291 through 18771 annotations produced 1 hits



(CG10681):

Annotation Number : CG10681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036291
Gbrowse : chr3L:12494704-12495747 (+) // 100.0 //
Probeset : 1626431_at
Accessions : protein= NP_648580;, nucleotide= NM_140323;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036291.
BioGrid reports that CG10681 interacts with CG14788 CG30077 CG5341 CG1091 CG5053 CG9201 .
VDRC has 3 RNAi stocks for FBgn0036291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain80 ± 24 of 4 1.20None
Head53 ± 34 of 4 0.80None
Eye54 ± 44 of 4 0.81None
Thoracicoabdominal ganglion94 ± 14 of 4 1.40Up
Salivary gland65 ± 53 of 4 0.97None
Crop81 ± 64 of 4 1.20None
Midgut50 ± 12 of 4 0.80Down
Tubule43 ± 24 of 4 0.60Down
Hindgut53 ± 14 of 4 0.80None
Heart52 ± 34 of 4 0.78None
Fat body45 ± 64 of 4 0.68Down
Ovary103 ± 44 of 4 1.50Up
Testis100 ± 74 of 4 1.50Up
Male accessory glands50 ± 04 of 4 0.80Down
Virgin spermatheca78 ± 44 of 4 1.17None
Mated spermatheca80 ± 24 of 4 1.19None
Adult carcass56 ± 94 of 4 0.80None
Larval CNS105 ± 74 of 4 1.57Up
Larval Salivary gland75 ± 24 of 4 1.13None
Larval midgut91 ± 70 of 4 1.36Up
Larval tubule100 ± 64 of 4 1.50Up
Larval hindgut47 ± 34 of 4 0.72Down
Larval fat body84 ± 44 of 4 1.30Up
Larval trachea52 ± 104 of 4 0.78None
Larval carcass66 ± 34 of 4 0.99None
S2 cells (growing)81 ± 14 of 4 1.22Up
Whole fly67 ± 44 of 4

Looking for FBgn0036291. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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