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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036294 through 18771 annotations produced 1 hits


Annotation Number : CG10654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036294
Gbrowse : chr3L:12498868-12500810 (-) // 100.0 //
Probeset : 1624288_at
Accessions : protein= NP_648583;, nucleotide= NM_140326;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0036294.
BDGP gene expression has embryonic in situ data for CG10654: 11 pix of staining in 4 body parts.
Homophila reports that CG10654 is a close match (3e-11) to human gene STQTL10;ZBTB38 (NP_001073881), a gene associated with {Stature QTL 10}, 612221 (3).
BioGrid reports that CG10654 interacts with CG11799 CG14011 CG17801 CG17855 CG4730 CG8301 CG9797 CG10959 CG12114 CG12428 CG14444 CG15224 CG16747 CG1676 CG2926 CG3430 CG4568 CG5111 CG8414 CG8965 .
TRiP has 1 RNAi stocks for FBgn0036294 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036294 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 94 of 416.00Up
Head41 41 of 4 5.20Up
Eye33 34 of 4 4.11Up
Thoracicoabdominal ganglion169 134 of 420.90Up
Salivary gland2 00 of 4 0.28None
Crop0 00 of 4 0.10None
Midgut1 00 of 4 0.10None
Tubule28 51 of 4 3.50Up
Hindgut1 00 of 4 0.20None
Heart0 00 of 4 0.10None
Fat body1 00 of 4 0.15None
Ovary9 00 of 4 1.10None
Testis0 00 of 4 0.10None
Male accessory glands3 00 of 4 0.40None
Virgin spermatheca2 10 of 4 0.26None
Mated spermatheca1 00 of 4 0.15None
Adult carcass4 20 of 4 0.50None
Larval CNS78 54 of 4 9.63Up
Larval Salivary gland1 00 of 4 0.17None
Larval midgut2 00 of 4 0.33None
Larval tubule0 00 of 4 0.10None
Larval hindgut2 00 of 4 0.34None
Larval fat body1 00 of 4 0.20None
Larval trachea1 00 of 4 0.16None
Larval carcass1 00 of 4 0.20None
S2 cells (growing)1 00 of 4 0.17None
Whole fly8 20 of 4

Looking for FBgn0036294. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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