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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036300 through 18771 annotations produced 1 hits



(CG10688):

Annotation Number : CG10688
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036300
Gbrowse : chr3L:12527689-12528615 (+) // 100.0 //
Probeset : 1636257_at
Accessions : protein= NP_648589;, nucleotide= NM_140332;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004615 // phosphomannomutase activity // infer
FlyMine data for FBgn0036300.
BDGP gene expression has embryonic in situ data for CG10688: 4 pix of staining in 1 body parts.
Homophila reports that CG10688 is a close match (2e-74) to human gene PMM2;CDG1 (NP_000294), a gene associated with Carbohydrate-deficient glycoprotein syndrome, type I, 212065 (3).
VDRC has 3 RNAi stocks for FBgn0036300 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 ± 24 of 4 0.60Down
Head195 ± 144 of 4 1.40Up
Eye151 ± 74 of 4 1.06None
Thoracicoabdominal ganglion74 ± 54 of 4 0.50Down
Salivary gland946 ± 714 of 4 6.62Up
Crop162 ± 64 of 4 1.10None
Midgut427 ± 134 of 4 3.00Up
Tubule670 ± 584 of 4 4.70Up
Hindgut136 ± 24 of 4 1.00None
Heart285 ± 204 of 4 1.99Up
Fat body339 ± 594 of 4 2.38Up
Ovary128 ± 44 of 4 0.90None
Testis36 ± 24 of 4 0.30Down
Male accessory glands505 ± 194 of 4 3.50Up
Virgin spermatheca755 ± 284 of 4 5.28Up
Mated spermatheca865 ± 734 of 4 6.05Up
Adult carcass198 ± 94 of 4 1.40Up
Larval CNS106 ± 94 of 4 0.75Down
Larval Salivary gland1314 ± 434 of 4 9.19Up
Larval midgut255 ± 154 of 4 1.79Up
Larval tubule466 ± 174 of 4 3.30Up
Larval hindgut168 ± 84 of 4 1.18None
Larval fat body451 ± 374 of 4 3.20Up
Larval trachea154 ± 274 of 4 1.08None
Larval carcass115 ± 44 of 4 0.81Down
S2 cells (growing)322 ± 24 of 4 2.26Up
Whole fly143 ± 74 of 4

Looking for FBgn0036300. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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