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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036301 through 18771 annotations produced 1 hits



(CG4069):

Annotation Number : CG4069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036301
Gbrowse : chr3L:12528523-12530410 (-) // 100.0 //
Probeset : 1639159_at
Accessions : protein= NP_648590;, nucleotide= NM_140333;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0036301.
BDGP gene expression has embryonic in situ data for CG4069: 8 pix of staining in 11 body parts.
BioGrid reports that CG4069 interacts with CG8495 CG30425 .
VDRC has 1 RNAi stocks for FBgn0036301 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 34 of 4 0.60Down
Head54 34 of 4 0.30Down
Eye40 14 of 4 0.25Down
Thoracicoabdominal ganglion118 34 of 4 0.70Down
Salivary gland80 54 of 4 0.49Down
Crop91 74 of 4 0.60Down
Midgut66 44 of 4 0.40Down
Tubule85 154 of 4 0.50Down
Hindgut64 34 of 4 0.40Down
Heart47 24 of 4 0.29Down
Fat body74 64 of 4 0.45Down
Ovary312 114 of 4 1.90Up
Testis88 74 of 4 0.50Down
Male accessory glands141 74 of 4 0.90None
Virgin spermatheca85 54 of 4 0.52Down
Mated spermatheca135 74 of 4 0.83Down
Adult carcass60 54 of 4 0.40Down
Larval CNS182 114 of 4 1.11None
Larval Salivary gland124 74 of 4 0.76Down
Larval midgut53 44 of 4 0.32Down
Larval tubule53 24 of 4 0.30Down
Larval hindgut81 64 of 4 0.49Down
Larval fat body46 51 of 4 0.30Down
Larval trachea125 164 of 4 0.76Down
Larval carcass92 184 of 4 0.56Down
S2 cells (growing)105 24 of 4 0.64Down
Whole fly164 84 of 4

Looking for FBgn0036301. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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