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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036302 through 18771 annotations produced 2 hits



sosondowah (sowah):

Annotation Number : CG10632
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036302
Gbrowse : chr3L:12556504-12565603 (-) // 99.6 //
Probeset : 1639811_at
Accessions : protein= NP_001137941; /// NP_001137942; /// NP_001137943; /// NP_729816;, nucleotide= NM_001144469; /// NM_001144470; /// NM_001144471; /// NM_168503;
FlyMine data for FBgn0036302.
BioGrid reports that CG10632 interacts with CG5884 CG13083 CG16747 CG4394 CG4755 Dmel CG34168 .
VDRC has 1 RNAi stocks for FBgn0036302 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 14 of 4 4.40Up
Head6 ± 11 of 4 2.30None
Eye5 ± 10 of 4 2.14None
Thoracicoabdominal ganglion7 ± 10 of 4 2.70None
Salivary gland9 ± 40 of 4 3.49None
Crop14 ± 14 of 4 5.40Up
Midgut11 ± 20 of 4 4.50Up
Tubule8 ± 01 of 4 3.20Up
Hindgut11 ± 11 of 4 4.40Up
Heart7 ± 11 of 4 2.97Up
Fat body11 ± 32 of 4 4.50Up
Ovary5 ± 11 of 4 1.90None
Testis2 ± 10 of 4 1.00None
Male accessory glands7 ± 31 of 4 2.70None
Virgin spermatheca8 ± 11 of 4 3.37Up
Mated spermatheca8 ± 33 of 4 3.25None
Adult carcass2 ± 00 of 4 1.10None
Larval CNS9 ± 24 of 4 3.50Up
Larval Salivary gland11 ± 23 of 4 4.38Up
Larval midgut4 ± 10 of 4 1.88None
Larval tubule10 ± 21 of 4 3.80None
Larval hindgut4 ± 21 of 4 1.77None
Larval fat body10 ± 21 of 4 3.90Up
Larval trachea7 ± 14 of 4 2.93Up
Larval carcass7 ± 00 of 4 2.83Up
S2 cells (growing)14 ± 02 of 4 5.52Up
Whole fly2 ± 00 of 4



sosondowah (sowah):

Annotation Number : CG10632
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036302
Gbrowse : chr3L:12530608-12565622 (-) // 100.0 //
Probeset : 1631040_at
Accessions : protein= NP_001137941; /// NP_001137942; /// NP_001137943; /// NP_729816;, nucleotide= NM_001144469; /// NM_001144470; /// NM_001144471; /// NM_168503;
FlyMine data for FBgn0036302.
BioGrid reports that CG10632 interacts with CG5884 CG13083 CG16747 CG4394 CG4755 Dmel CG34168 .
VDRC has 1 RNAi stocks for FBgn0036302 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 ± 24 of 4 1.80Up
Head50 ± 34 of 4 1.10None
Eye71 ± 14 of 4 1.54Up
Thoracicoabdominal ganglion82 ± 14 of 4 1.80Up
Salivary gland67 ± 83 of 4 1.45None
Crop93 ± 74 of 4 2.00Up
Midgut32 ± 13 of 4 0.70Down
Tubule21 ± 01 of 4 0.50Down
Hindgut64 ± 34 of 4 1.40Up
Heart36 ± 44 of 4 0.79None
Fat body32 ± 40 of 4 0.69Down
Ovary72 ± 44 of 4 1.60Up
Testis29 ± 44 of 4 0.60Down
Male accessory glands163 ± 134 of 4 3.50Up
Virgin spermatheca46 ± 43 of 4 1.00None
Mated spermatheca44 ± 33 of 4 0.95None
Adult carcass57 ± 53 of 4 1.20None
Larval CNS70 ± 124 of 4 1.53Up
Larval Salivary gland93 ± 64 of 4 2.00Up
Larval midgut29 ± 14 of 4 0.64Down
Larval tubule37 ± 23 of 4 0.80Down
Larval hindgut95 ± 54 of 4 2.06Up
Larval fat body52 ± 12 of 4 1.10None
Larval trachea116 ± 94 of 4 2.50Up
Larval carcass55 ± 34 of 4 1.18None
S2 cells (growing)291 ± 24 of 4 6.28Up
Whole fly46 ± 14 of 4

Looking for FBgn0036302. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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