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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036305 through 18771 annotations produced 1 hits



(CG10984):

Annotation Number : CG10984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036305
Gbrowse : chr3L:12743218-12746502 (+) // 100.0 //
Probeset : 1628892_s_at
Accessions : protein= NP_648593; /// NP_729823; /// NP_729824;, nucleotide= NM_140336; /// NM_168510; /// NM_168511;
FlyMine data for FBgn0036305.
BDGP gene expression has embryonic in situ data for CG10984: 13 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0036305 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain265 ± 224 of 4 3.00Up
Head97 ± 44 of 4 1.10None
Eye111 ± 104 of 4 1.27None
Thoracicoabdominal ganglion292 ± 94 of 4 3.30Up
Salivary gland138 ± 74 of 4 1.58Up
Crop132 ± 74 of 4 1.50Up
Midgut51 ± 54 of 4 0.60Down
Tubule63 ± 44 of 4 0.70Down
Hindgut81 ± 24 of 4 0.90None
Heart80 ± 14 of 4 0.92None
Fat body64 ± 114 of 4 0.74Down
Ovary189 ± 44 of 4 2.20Up
Testis296 ± 224 of 4 3.40Up
Male accessory glands122 ± 44 of 4 1.40Up
Virgin spermatheca56 ± 04 of 4 0.64Down
Mated spermatheca64 ± 14 of 4 0.74Down
Adult carcass73 ± 24 of 4 0.80Down
Larval CNS242 ± 114 of 4 2.76Up
Larval Salivary gland169 ± 84 of 4 1.93Up
Larval midgut54 ± 44 of 4 0.62Down
Larval tubule129 ± 94 of 4 1.50Up
Larval hindgut95 ± 24 of 4 1.09None
Larval fat body72 ± 74 of 4 0.80None
Larval trachea141 ± 94 of 4 1.61Up
Larval carcass120 ± 84 of 4 1.38Up
S2 cells (growing)163 ± 24 of 4 1.86Up
Whole fly87 ± 34 of 4

Looking for FBgn0036305. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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