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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036323 through 18771 annotations produced 1 hits



(CG14118):

Annotation Number : CG14118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036323
Gbrowse : chr3L:12885812-12887596 (+) // 100.0 //
Probeset : 1624261_at
Accessions : protein= NP_648612;, nucleotide= NM_140355;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred fro
FlyMine data for FBgn0036323.
BioGrid reports that CG14118 interacts with CG4532 .
VDRC has 3 RNAi stocks for FBgn0036323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 21 of 4 0.60None
Head7 ± 00 of 4 0.60None
Eye3 ± 00 of 4 0.33Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.30Down
Salivary gland318 ± 174 of 426.59Up
Crop11 ± 20 of 4 0.90None
Midgut14 ± 20 of 4 1.20None
Tubule56 ± 64 of 4 4.70Up
Hindgut12 ± 31 of 4 1.00None
Heart3 ± 00 of 4 0.27Down
Fat body7 ± 50 of 4 0.66None
Ovary8 ± 13 of 4 0.70None
Testis7 ± 01 of 4 0.60None
Male accessory glands14 ± 20 of 4 1.20None
Virgin spermatheca7 ± 10 of 4 0.66None
Mated spermatheca6 ± 20 of 4 0.56None
Adult carcass9 ± 20 of 4 0.80None
Larval CNS7 ± 12 of 4 0.63None
Larval Salivary gland202 ± 34 of 416.92Up
Larval midgut16 ± 00 of 4 1.41None
Larval tubule13 ± 12 of 4 1.10None
Larval hindgut12 ± 02 of 4 1.03None
Larval fat body14 ± 40 of 4 1.20None
Larval trachea7 ± 31 of 4 0.62None
Larval carcass13 ± 14 of 4 1.09None
S2 cells (growing)54 ± 34 of 4 4.57Up
Whole fly12 ± 22 of 4

Looking for FBgn0036323. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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