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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036324 through 18771 annotations produced 1 hits


Annotation Number : CG12520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036324
Gbrowse : chr3L:12894474-12895077 (-) // 100.0 //
Probeset : 1630649_at
Accessions : protein= NP_001097596;, nucleotide= NM_001104126;
FlyMine data for FBgn0036324.
VDRC has 6 RNAi stocks for FBgn0036324 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 1.00None
Head8 11 of 4 2.30None
Eye3 00 of 4 1.06None
Thoracicoabdominal ganglion4 20 of 4 1.10None
Salivary gland2 00 of 4 0.76None
Crop12 04 of 4 3.50Up
Midgut4 10 of 4 1.30None
Tubule3 00 of 4 0.90None
Hindgut8 02 of 4 2.20Up
Heart0 00 of 4 0.26None
Fat body4 30 of 4 1.15None
Ovary7 11 of 4 2.00None
Testis4 12 of 4 1.10None
Male accessory glands4 10 of 4 1.20None
Virgin spermatheca2 00 of 4 0.55None
Mated spermatheca0 00 of 4 0.23None
Adult carcass7 20 of 4 2.10None
Larval CNS1 10 of 4 0.42None
Larval Salivary gland1 00 of 4 0.32None
Larval midgut2 00 of 4 0.72None
Larval tubule2 10 of 4 0.70None
Larval hindgut2 10 of 4 0.77None
Larval fat body16 41 of 4 4.40None
Larval trachea1 00 of 4 0.44None
Larval carcass2 10 of 4 0.75None
S2 cells (growing)21 24 of 4 5.87Up
Whole fly3 10 of 4

Looking for FBgn0036324. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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