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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036327 through 18771 annotations produced 1 hits



(CG10748):

Annotation Number : CG10748
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036327
Gbrowse : chr3L:12964313-12965459 (-) // 99.65 //
Probeset : 1634045_at
Accessions : protein= NP_648615;, nucleotide= NM_140358;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0036327.
VDRC has 1 RNAi stocks for FBgn0036327 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland7 ± 30 of 4 0.29Down
Crop6 ± 10 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.06Down
Fat body2 ± 10 of 4 0.09Down
Ovary2 ± 00 of 4 0.10Down
Testis401 ± 54 of 414.60Up
Male accessory glands9 ± 10 of 4 0.30Down
Virgin spermatheca8 ± 12 of 4 0.30Down
Mated spermatheca9 ± 21 of 4 0.33Down
Adult carcass3 ± 00 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.13Down
Larval Salivary gland2 ± 00 of 4 0.10Down
Larval midgut2 ± 10 of 4 0.09Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.05Down
Larval fat body82 ± 314 of 4 3.00None
Larval trachea3 ± 20 of 4 0.12Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly27 ± 24 of 4

Looking for FBgn0036327. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime