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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036328 through 18771 annotations produced 1 hits



(CG10749):

Annotation Number : CG10749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036328
Gbrowse : chr3L:12965573-12966754 (+) // 100.0 //
Probeset : 1628379_at
Accessions : protein= NP_648616;, nucleotide= NM_140359;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // infer
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0036328.
BioGrid reports that CG10749 interacts with CG14210 CG13510 .
VDRC has 3 RNAi stocks for FBgn0036328 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye2 10 of 4 0.05Down
Thoracicoabdominal ganglion5 10 of 4 0.10Down
Salivary gland12 11 of 4 0.23Down
Crop3 00 of 4 0.10Down
Midgut4 20 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut2 10 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body9 20 of 4 0.18Down
Ovary0 00 of 4 0.00Down
Testis786 254 of 415.10Up
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca3 00 of 4 0.07Down
Adult carcass7 30 of 4 0.10Down
Larval CNS2 10 of 4 0.04Down
Larval Salivary gland5 10 of 4 0.11Down
Larval midgut2 00 of 4 0.04Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut3 10 of 4 0.07Down
Larval fat body52 273 of 4 1.00None
Larval trachea4 51 of 4 0.08Down
Larval carcass1 00 of 4 0.03Down
S2 cells (growing)3 10 of 4 0.07Down
Whole fly52 34 of 4

Looking for FBgn0036328. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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