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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036329 through 18771 annotations produced 1 hits


(CG11262):

Annotation Number : CG11262
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036329
Gbrowse : chr3L:12988234-12990392 (+) // 100.0 //
Probeset : 1629763_at
Accessions : protein= NP_648617;, nucleotide= NM_140360;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0015137 // citrate transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0036329.
Homophila reports that CG11262 is a close match (4e-82) to human gene BOCA;D15S12;EYCL3;HCL3;OCA2;P;PED;SHEP1 (NP_000266), a gene associated with Albinism, brown oculocutaneous, 203200 (3);Albinism, oculocutaneous, type II, 203200 (3);[Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
VDRC has 2 RNAi stocks for FBgn0036329 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 10 of 4 0.10Down
Eye1 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.31Down
Crop0 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.03Down
Fat body1 ± 00 of 4 0.05Down
Ovary1 ± 00 of 4 0.10Down
Testis312 ± 94 of 416.40Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.05Down
Mated spermatheca0 ± 00 of 4 0.04Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.13Down
Larval midgut1 ± 00 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body20 ± 101 of 4 1.10None
Larval trachea4 ± 31 of 4 0.25Down
Larval carcass0 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly19 ± 14 of 4

Looking for FBgn0036329. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime