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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036330 through 18771 annotations produced 1 hits


(CG11263):

Annotation Number : CG11263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036330
Gbrowse : chr3L:12999923-13000981 (+) // 100.0 //
Probeset : 1625713_at
Accessions : protein= NP_001163435; /// NP_648618;, nucleotide= NM_001169964; /// NM_140361;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0036330.
BDGP gene expression has embryonic in situ data for CG11263: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036330 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland15 ± 40 of 4 0.36Down
Crop8 ± 20 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.04Down
Fat body5 ± 50 of 4 0.14Down
Ovary78 ± 64 of 4 1.90Up
Testis7 ± 10 of 4 0.20Down
Male accessory glands7 ± 20 of 4 0.20Down
Virgin spermatheca4 ± 10 of 4 0.11Down
Mated spermatheca6 ± 00 of 4 0.16Down
Adult carcass5 ± 30 of 4 0.10Down
Larval CNS3 ± 00 of 4 0.08Down
Larval Salivary gland5 ± 10 of 4 0.12Down
Larval midgut3 ± 10 of 4 0.08Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.11Down
Larval fat body7 ± 20 of 4 0.20Down
Larval trachea1 ± 00 of 4 0.03Down
Larval carcass3 ± 10 of 4 0.07Down
S2 cells (growing)4 ± 10 of 4 0.10Down
Whole fly41 ± 64 of 4

Looking for FBgn0036330. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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