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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036331 through 18771 annotations produced 1 hits



(CG14117):

Annotation Number : CG14117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036331
Gbrowse : chr3L:13001383-13002558 (+) // 99.62 //
Probeset : 1629000_at
Accessions : protein= NP_001163436; /// NP_648619;, nucleotide= NM_001169965; /// NM_140362;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0036331.
VDRC has 3 RNAi stocks for FBgn0036331 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 24 of 4 0.20Down
Head28 24 of 4 0.40Down
Eye28 34 of 4 0.38Down
Thoracicoabdominal ganglion18 14 of 4 0.20Down
Salivary gland42 54 of 4 0.55Down
Crop61 44 of 4 0.80Down
Midgut19 14 of 4 0.30Down
Tubule17 13 of 4 0.20Down
Hindgut26 14 of 4 0.30Down
Heart43 34 of 4 0.56Down
Fat body36 44 of 4 0.48Down
Ovary212 54 of 4 2.80Up
Testis62 44 of 4 0.80None
Male accessory glands37 34 of 4 0.50Down
Virgin spermatheca41 44 of 4 0.54Down
Mated spermatheca40 24 of 4 0.53Down
Adult carcass38 33 of 4 0.50Down
Larval CNS28 34 of 4 0.38Down
Larval Salivary gland41 24 of 4 0.54Down
Larval midgut20 12 of 4 0.27Down
Larval tubule24 24 of 4 0.30Down
Larval hindgut30 24 of 4 0.39Down
Larval fat body79 54 of 4 1.00None
Larval trachea52 44 of 4 0.68Down
Larval carcass44 24 of 4 0.58Down
S2 cells (growing)31 24 of 4 0.41Down
Whole fly76 44 of 4

Looking for FBgn0036331. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime