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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036333 through 18771 annotations produced 1 hits



MICAL-like (MICAL-like):

Annotation Number : CG11259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036333
Gbrowse : chr3L:13005074-13008407 (-) // 100.0 //
Probeset : 1631979_at
Accessions : protein= NP_648621;, nucleotide= NM_140364;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred
FlyMine data for FBgn0036333.
BDGP gene expression has embryonic in situ data for MICAL-like: 20 pix of staining in 15 body parts.
Homophila reports that CG11259 is a close match (9e-11) to human gene EBS1;PLEC1;PLTN (NP_958782), a gene associated with Epidermolysis bullosa simplex with pyloric atresia, 612138 (3);Epidermolysis bullosa simplex, Ogna type, 131950 (3);Muscular dystrophy with epidermolysis bullosa simplex, 226670 (3).
BioGrid reports that CG11259 interacts with CG11427 CG32156 CG5346 CG9014 .
TRiP has 1 RNAi stocks for FBgn0036333 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036333 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain357 ± 84 of 4 2.10Up
Head155 ± 134 of 4 0.90None
Eye141 ± 44 of 4 0.84None
Thoracicoabdominal ganglion429 ± 254 of 4 2.50Up
Salivary gland154 ± 74 of 4 0.91None
Crop186 ± 74 of 4 1.10None
Midgut147 ± 64 of 4 0.90None
Tubule246 ± 64 of 4 1.50Up
Hindgut201 ± 74 of 4 1.20None
Heart89 ± 54 of 4 0.53Down
Fat body83 ± 114 of 4 0.49Down
Ovary376 ± 74 of 4 2.20Up
Testis117 ± 104 of 4 0.70Down
Male accessory glands96 ± 74 of 4 0.60Down
Virgin spermatheca128 ± 94 of 4 0.76None
Mated spermatheca160 ± 34 of 4 0.95None
Adult carcass75 ± 64 of 4 0.40Down
Larval CNS181 ± 94 of 4 1.07None
Larval Salivary gland309 ± 84 of 4 1.83Up
Larval midgut152 ± 44 of 4 0.90None
Larval tubule317 ± 34 of 4 1.90Up
Larval hindgut313 ± 74 of 4 1.85Up
Larval fat body122 ± 84 of 4 0.70Down
Larval trachea208 ± 194 of 4 1.23None
Larval carcass161 ± 34 of 4 0.95None
S2 cells (growing)296 ± 94 of 4 1.76Up
Whole fly169 ± 134 of 4

Looking for FBgn0036333. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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