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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036335 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L20 (mRpL20):

Annotation Number : CG11258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036335
Gbrowse : chr3L:13010244-13010933 (-) // 100.0 //
Probeset : 1635706_at
Accessions : protein= NP_524051;, nucleotide= NM_079327;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0036335.
VDRC has 2 RNAi stocks for FBgn0036335 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 54 of 4 0.80Down
Head190 114 of 4 0.70Down
Eye129 54 of 4 0.48Down
Thoracicoabdominal ganglion236 84 of 4 0.90None
Salivary gland176 124 of 4 0.66Down
Crop174 144 of 4 0.70Down
Midgut170 54 of 4 0.60Down
Tubule93 24 of 4 0.40Down
Hindgut240 64 of 4 0.90None
Heart182 84 of 4 0.68Down
Fat body223 114 of 4 0.84Down
Ovary373 114 of 4 1.40Up
Testis46 24 of 4 0.20Down
Male accessory glands197 94 of 4 0.70Down
Virgin spermatheca119 94 of 4 0.45Down
Mated spermatheca153 64 of 4 0.58Down
Adult carcass183 84 of 4 0.70Down
Larval CNS271 184 of 4 1.02None
Larval Salivary gland246 144 of 4 0.92None
Larval midgut107 94 of 4 0.40Down
Larval tubule65 24 of 4 0.20Down
Larval hindgut206 184 of 4 0.77Down
Larval fat body83 104 of 4 0.30Down
Larval trachea210 304 of 4 0.79Down
Larval carcass151 254 of 4 0.57Down
S2 cells (growing)111 44 of 4 0.42Down
Whole fly266 114 of 4

Looking for FBgn0036335. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime