FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036341 through 18771 annotations produced 1 hits

syntaxin (Syx13):

Annotation Number : CG11278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036341
Gbrowse : chr3L:13037535-13040001 (+) // 100.0 //
Probeset : 1635186_at
Accessions : protein= NP_524054;, nucleotide= NM_079330;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0005484 // SNAP receptor activity // inferred from sequence or structural similarity /// 0005484 // SNAP receptor activi
FlyMine data for FBgn0036341.
TRiP has 2 RNAi stocks for FBgn0036341 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036341 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	202 ± 2	4 of 4	1.20	None
Head	176 ± 10	4 of 4	1.00	None
Eye	346 ± 8	4 of 4	2.03	Up
Thoracicoabdominal ganglion	206 ± 6	4 of 4	1.20	None
Salivary gland	116 ± 3	4 of 4	0.68	Down
Crop	135 ± 3	4 of 4	0.80	None
Midgut	284 ± 10	4 of 4	1.70	Up
Tubule	162 ± 2	4 of 4	1.00	Down
Hindgut	137 ± 4	4 of 4	0.80	None
Heart	220 ± 18	4 of 4	1.30	None
Fat body	121 ± 12	4 of 4	0.71	Down
Ovary	320 ± 7	4 of 4	1.90	Up
Testis	55 ± 5	4 of 4	0.30	Down
Male accessory glands	93 ± 11	4 of 4	0.50	Down
Virgin spermatheca	163 ± 12	4 of 4	0.96	None
Mated spermatheca	164 ± 7	4 of 4	0.97	None
Adult carcass	90 ± 8	4 of 4	0.50	Down
Larval CNS	173 ± 7	4 of 4	1.02	None
Larval Salivary gland	164 ± 12	4 of 4	0.96	None
Larval midgut	623 ± 49	4 of 4	3.66	Up
Larval tubule	452 ± 26	4 of 4	2.70	Up
Larval hindgut	214 ± 8	4 of 4	1.26	Up
Larval fat body	939 ± 177	4 of 4	5.50	Up
Larval trachea	186 ± 13	4 of 4	1.09	None
Larval carcass	199 ± 14	4 of 4	1.17	None
S2 cells (growing)	226 ± 11	4 of 4	1.33	Up
Whole fly	170 ± 14	4 of 4

Looking for FBgn0036341. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720