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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036342 through 18771 annotations produced 1 hits



(CG11279):

Annotation Number : CG11279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036342
Gbrowse : chr3L:13040123-13040619 (+) // 99.08 //
Probeset : 1631362_at
Accessions : protein= NP_648628;, nucleotide= NM_140371;
FlyMine data for FBgn0036342.
VDRC has 1 RNAi stocks for FBgn0036342 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 44 of 4 0.60Down
Head234 114 of 4 0.90None
Eye189 84 of 4 0.70Down
Thoracicoabdominal ganglion172 114 of 4 0.60Down
Salivary gland158 124 of 4 0.59Down
Crop224 104 of 4 0.80None
Midgut166 24 of 4 0.60Down
Tubule77 64 of 4 0.30Down
Hindgut150 34 of 4 0.60Down
Heart228 44 of 4 0.84None
Fat body402 214 of 4 1.49Up
Ovary474 124 of 4 1.80Up
Testis167 84 of 4 0.60Down
Male accessory glands611 134 of 4 2.30Up
Virgin spermatheca235 164 of 4 0.87None
Mated spermatheca352 104 of 4 1.31Up
Adult carcass194 174 of 4 0.70Down
Larval CNS299 84 of 4 1.11None
Larval Salivary gland218 214 of 4 0.81None
Larval midgut97 64 of 4 0.36Down
Larval tubule79 34 of 4 0.30Down
Larval hindgut161 94 of 4 0.60Down
Larval fat body164 54 of 4 0.60Down
Larval trachea316 364 of 4 1.17None
Larval carcass176 194 of 4 0.66Down
S2 cells (growing)294 54 of 4 1.09None
Whole fly270 234 of 4

Looking for FBgn0036342. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime