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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036345 through 18771 annotations produced 1 hits



(CG17300):

Annotation Number : CG17300
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036345
Gbrowse : chr3L:13079486-13080389 (-) // 100.0 //
Probeset : 1628295_at
Accessions : protein= NP_648631;, nucleotide= NM_140374;
Pathway : "0000276 // mitochondrial proton-transporting ATP synthase complex
Interpro : coupling factor F(o) // inferred from electronic annotation"
FlyMine data for FBgn0036345.
VDRC has 1 RNAi stocks for FBgn0036345 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland13 ± 20 of 4 0.19Down
Crop2 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 11 of 4 0.04Down
Fat body1 ± 10 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis862 ± 254 of 412.70Up
Male accessory glands7 ± 30 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.02Down
Mated spermatheca2 ± 10 of 4 0.03Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut5 ± 00 of 4 0.08Down
Larval fat body74 ± 322 of 4 1.10None
Larval trachea4 ± 71 of 4 0.07Down
Larval carcass4 ± 20 of 4 0.06Down
S2 cells (growing)2 ± 10 of 4 0.04Down
Whole fly67 ± 24 of 4

Looking for FBgn0036345. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime