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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036346 through 18771 annotations produced 1 hits



(CG11251):

Annotation Number : CG11251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036346
Gbrowse : chr3L:13081911-13082928 (-) // 100.0 //
Probeset : 1625605_at
Accessions : protein= NP_648632;, nucleotide= NM_140375;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0036346.
VDRC has 3 RNAi stocks for FBgn0036346 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.09Down
Crop2 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 10 of 4 0.09Down
Fat body6 ± 40 of 4 0.18Down
Ovary1 ± 00 of 4 0.00Down
Testis543 ± 54 of 414.60Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.15Down
Mated spermatheca4 ± 00 of 4 0.12Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.05Down
Larval Salivary gland3 ± 10 of 4 0.08Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body46 ± 242 of 4 1.30None
Larval trachea1 ± 20 of 4 0.04Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly37 ± 44 of 4

Looking for FBgn0036346. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime