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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036353 through 18771 annotations produced 1 hits


Annotation Number : CG10171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036353
Gbrowse : chr3L:13379192-13380969 (-) // 100.0 //
Probeset : 1631006_a_at
Accessions : protein= NP_648639; /// NP_729888;, nucleotide= NM_140382; /// NM_168542;
FlyMine data for FBgn0036353.
BDGP gene expression has embryonic in situ data for CG10171: 14 pix of staining in 8 body parts.
VDRC has 3 RNAi stocks for FBgn0036353 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 24 of 4 0.90None
Head139 44 of 4 0.90None
Eye219 104 of 4 1.42Up
Thoracicoabdominal ganglion163 44 of 4 1.10None
Salivary gland171 44 of 4 1.11None
Crop151 34 of 4 1.00None
Midgut43 14 of 4 0.30Down
Tubule70 04 of 4 0.50Down
Hindgut91 24 of 4 0.60Down
Heart137 44 of 4 0.89None
Fat body224 164 of 4 1.45Up
Ovary210 24 of 4 1.40Up
Testis754 74 of 4 4.90Up
Male accessory glands209 114 of 4 1.40Up
Virgin spermatheca297 24 of 4 1.92Up
Mated spermatheca288 194 of 4 1.86Up
Adult carcass141 64 of 4 0.90None
Larval CNS165 114 of 4 1.07None
Larval Salivary gland315 84 of 4 2.04Up
Larval midgut75 24 of 4 0.49Down
Larval tubule110 34 of 4 0.70Down
Larval hindgut182 34 of 4 1.18Up
Larval fat body536 384 of 4 3.50Up
Larval trachea327 114 of 4 2.12Up
Larval carcass119 94 of 4 0.77Down
S2 cells (growing)142 64 of 4 0.92None
Whole fly154 64 of 4

Looking for FBgn0036353. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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