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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036354 through 18771 annotations produced 1 hits

Proteome of centrioles 1 (Poc1):

Annotation Number : CG10191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036354
Gbrowse : chr3L:13381392-13383088 (-) // 100.0 //
Probeset : 1636210_at
Accessions : protein= NP_648640;, nucleotide= NM_140383;
FlyMine data for FBgn0036354.
BDGP gene expression has embryonic in situ data for CG10191: 27 pix of staining in 19 body parts.
Homophila reports that CG10191 is a close match (2e-23) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
VDRC has 2 RNAi stocks for FBgn0036354 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 04 of 4 0.10Down
Head15 14 of 4 0.10Down
Eye32 24 of 4 0.22Down
Thoracicoabdominal ganglion22 24 of 4 0.10Down
Salivary gland20 22 of 4 0.13Down
Crop22 24 of 4 0.10Down
Midgut27 33 of 4 0.20Down
Tubule10 12 of 4 0.10Down
Hindgut17 04 of 4 0.10Down
Heart16 24 of 4 0.10Down
Fat body14 14 of 4 0.09Down
Ovary243 124 of 4 1.60Up
Testis660 194 of 4 4.30Up
Male accessory glands14 21 of 4 0.10Down
Virgin spermatheca9 13 of 4 0.06Down
Mated spermatheca12 14 of 4 0.08Down
Adult carcass25 24 of 4 0.20Down
Larval CNS253 64 of 4 1.66Up
Larval Salivary gland31 34 of 4 0.21Down
Larval midgut34 54 of 4 0.22Down
Larval tubule15 14 of 4 0.10Down
Larval hindgut33 24 of 4 0.22Down
Larval fat body130 574 of 4 0.90None
Larval trachea79 74 of 4 0.52Down
Larval carcass39 44 of 4 0.26Down
S2 cells (growing)482 104 of 4 3.16Up
Whole fly152 84 of 4

Looking for FBgn0036354. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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