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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036362 through 18771 annotations produced 1 hits



(CG10725):

Annotation Number : CG10725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036362
Gbrowse : chr3L:13431058-13432116 (+) // 100.0 //
Probeset : 1638716_a_at
Accessions : protein= NP_648647;, nucleotide= NM_140390;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016490 // structural constituent of peritrophic me
FlyMine data for FBgn0036362.
VDRC has 3 RNAi stocks for FBgn0036362 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head30 ± 124 of 4 0.20Down
Eye7 ± 11 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.00Down
Salivary gland15 ± 31 of 4 0.11Down
Crop15 ± 52 of 4 0.10Down
Midgut1128 ± 564 of 4 7.70Up
Tubule5 ± 00 of 4 0.00Down
Hindgut8 ± 12 of 4 0.10Down
Heart6 ± 12 of 4 0.04Down
Fat body8 ± 12 of 4 0.06Down
Ovary4 ± 00 of 4 0.00Down
Testis7 ± 04 of 4 0.00Down
Male accessory glands12 ± 11 of 4 0.10Down
Virgin spermatheca7 ± 00 of 4 0.05Down
Mated spermatheca12 ± 23 of 4 0.08Down
Adult carcass17 ± 53 of 4 0.10Down
Larval CNS5 ± 12 of 4 0.04Down
Larval Salivary gland6 ± 21 of 4 0.04Down
Larval midgut6177 ± 2634 of 442.28Up
Larval tubule10 ± 00 of 4 0.10Down
Larval hindgut9 ± 13 of 4 0.06Down
Larval fat body41 ± 44 of 4 0.30Down
Larval trachea5 ± 20 of 4 0.04Down
Larval carcass8 ± 02 of 4 0.06Down
S2 cells (growing)7 ± 10 of 4 0.05Down
Whole fly146 ± 244 of 4

Looking for FBgn0036362. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime